Chania

Date Palm Disease Resistance SSR Markers

      One of the great challenges for date palm breeding in the 21st century is to improve yield stability through the development of disease-resistant palm tree by use both genomic information and molecular tools. Here we integrated 42 SSR primers located within 16 different disease resistance genes, previously published by (Mokhtar et al., 2016). These data were summarized in the following table



Disease resistance genes product Contig Id in date palm genome Gene start in contig Gene end in contig Primers Id in our database
Brown planthopper-induced resistance protein 1 PDK_30s1053751 12041 18193 Pd_GSSR17692
CC-NBS-LRR resistance protein PDK_30s779571 1328 9575 Pd_GSSR21812
PDK_30s1078571 2782 7044 Pd_GSSR24293
PDK_30s790641 783 4086 Pd_GSSR28593
PDK_30s1108901 7116 10724 Pd_GSSR12441
PDK_30s1130951 4900 9698 Pd_GSSR7949
PDK_30s1159381 18412 23365 Pd_GSSR6260    Pd_GSSR6472
Disease resistance protein rps2 PDK_30s676021 11551 15125 Pd_GSSR14644
Enhanced disease resistance 1 PDK_30s1065091 52197 62496 Pd_GSSR21915    Pd_GSSR20858
Mlo family protein PDK_30s998451 515 10639 Pd_GSSR4248
Mlo-like protein 14 PDK_30s665521 33248 35690 Pd_GSSR26246    Pd_GSSR26248
Natural resistance-associated macrophage protein PDK_30s853031 786 7042 Pd_GSSR22306    Pd_GSSR20139
PDK_30s1104801 30723 37258 Pd_GSSR23219    Pd_GSSR13372
NBS-LRR type resistance protein PDK_30s742701 1713 6858 Pd_GSSR13458
PDK_30s665281 87243 102914 Pd_GSSR9509    Pd_GSSR26229    Pd_GSSR26231    Pd_GSSR8161    Pd_GSSR26232
Non-race specific disease resistance 1 PDK_30s909521 479 7523 Pd_GSSR3753    Pd_GSSR843
Protein kinase xa21 PDK_30s866171 2129 11697 Pd_GSSR29723    Pd_GSSR21041    Pd_GSSR2573
PDK_30s981471 9730 21118 Pd_GSSR2453    Pd_GSSR3991    Pd_GSSR2665    Pd_GSSR7836
Rin13 (rpm1 interacting protein 13) PDK_30s1036661 1243 5906 Pd_GSSR10984    Pd_GSSR13288    Pd_GSSR13265
Rpm1-interacting protein 4 PDK_30s866791 3182 7027 Pd_GSSR29728
Rust resistance kinase lr10 PDK_30s767921 186922 194251 Pd_GSSR16612    Pd_GSSR20405    Pd_GSSR16785
Seven transmembrane protein mlo8 (mlo8) PDK_30s827291 2600 6751 Pd_GSSR17488
TIR-NBS resistance protein PDK_30s1076091 57384 60783 Pd_GSSR6832
TIR-NBS-LRR type disease resistance protein PDK_30s716241 11276 14302 Pd_GSSR27275