Chania

Date Palm Disease Resistance SSR Markers

      One of the great challenges for date palm breeding in the 21st century is to improve yield stability through the development of disease-resistant palm tree by use both genomic information and molecular tools. Here we integrated 42 SSR primers located within 16 different disease resistance genes, previously published by (Mokhtar et al., 2016). These data were summarized in the following table

Disease resistance genes product Contig Id in date palm genome Gene start in contig Gene end in contig Primers Id in our database
Brown planthopper-induced resistance protein 1 PDK_30s1053751 12041 18193 Pd_GSSR1733
CC-NBS-LRR resistance protein PDK_30s779571 1328 9575 Pd_GSSR14611
PDK_30s1078571 2782 7044 Pd_GSSR24273
PDK_30s790641 783 4086 Pd_GSSR28574
PDK_30s1108901 7116 10724 Pd_GSSR3477
PDK_30s1130951 4900 9698 Pd_GSSR4096
PDK_30s1159381 18412 23365 Pd_GSSR4958    Pd_GSSR4959
Disease resistance protein rps2 PDK_30s676021 11551 15125 Pd_GSSR8887
Enhanced disease resistance 1 PDK_30s1065091 52197 62496 Pd_GSSR2000    Pd_GSSR2002
Mlo family protein PDK_30s998451 515 10639 Pd_GSSR31369
Mlo-like protein 14 PDK_30s665521 33248 35690 Pd_GSSR26227    Pd_GSSR26212
Natural resistance-associated macrophage protein PDK_30s853031 786 7042 Pd_GSSR17867    Pd_GSSR17868
NBS-LRR type resistance protein PDK_30s742701 1713 6858 Pd_GSSR12867
PDK_30s665281 87243 102914 Pd_GSSR8157    Pd_GSSR26212    Pd_GSSR26210    Pd_GSSR26212    Pd_GSSR26213
Non-race specific disease resistance 1 PDK_30s909521 479 7523 Pd_GSSR20333    Pd_GSSR20334
Protein kinase xa21 PDK_30s866171 2129 11697 Pd_GSSR18479    Pd_GSSR18481    Pd_GSSR29704
PDK_30s981471 9730 21118 Pd_GSSR22786    Pd_GSSR22787    Pd_GSSR22790    Pd_GSSR22791
Rin13 (rpm1 interacting protein 13) PDK_30s1036661 1243 5906 Pd_GSSR1055    Pd_GSSR1058    Pd_GSSR1061
Rpm1-interacting protein 4 PDK_30s866791 3182 7027 Pd_GSSR29709
Rust resistance kinase lr10 PDK_30s767921 186922 194251 Pd_GSSR14032    Pd_GSSR14033    Pd_GSSR14034
Seven transmembrane protein mlo8 (mlo8) PDK_30s827291 2600 6751 Pd_GSSR16802
TIR-NBS resistance protein PDK_30s1076091 57384 60783 Pd_GSSR2418
TIR-NBS-LRR type disease resistance protein PDK_30s716241 11276 14302 Pd_GSSR27256