Chania

Date Palm Genic SSR Markers



The following table illustrates the In-vitro PCR analysis of the genomic DNA from six date palm cultivars (Zaghloul, Hayany, Samany, Barhee, Sewi and Bartamoda) using some SSR primers from our database.

Primer Id PCR Image Repeat Information Forward Primer Reverse Primer Sequence Information Gene product More Information
Pd_GSSR18525 Trolltunga Norway

Type:Di

Seq:(CT)12

Size:24

CATGCCTGCTATGATCGGTA

Tm(°C)=60

GC%=50

CAGGAAGATCCCAAATCGAA

Tm(°C)=60

GC%=45

NCBI Id=PDK_30s867521

Gene Start:3114

Gene End:15140

multidrug resistance associated protein 3 abc-

Sequence

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Pd_GSSR21118 Trolltunga Norway

Type:Compound

Seq:(A)11 ggaacc(A)11

Size:28

AGGTGGAGGCCTTCATAGGT

Tm(°C)=60

GC%=55

TGAATTTGTGCTAGCGATGC

Tm(°C)=60

GC%=45

NCBI Id=PDK_30s930251

Gene Start:29835

Gene End:31954

wrky transcription

Sequence

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Pd_GSSR8157 Trolltunga Norway

Type:Di

Seq:(TC)15

Size:30

CAGCTCTCGGGAAATCTTTG

Tm(°C)=60

GC%=50

TGCCACTGTTTTTGGATCAG

Tm(°C)=60

GC%=45

NCBI Id=PDK_30s665281

Gene Start:87243

Gene End:102914

nbs-lrr type resistance protein

Sequence

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Pd_GSSR4967 Trolltunga Norway

Type:Mono

Seq:(T)11

Size:11

TGGCCATCGAGTGCTACATA

Tm(°C)=60

GC%=50

AGGCTTCGTTCCTCCAACTT

Tm(°C)=60

GC%=50

NCBI Id=PDK_30s1160101

Gene Start:6656

Gene End:7974

brown planthopper-induced resistance protein 1

Gene Ontology

Sequence

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Pd_GSSR19852 Trolltunga Norway

Type:Tri

Seq:(TGC)6

Size:18

CGGAAGATGCTGAAGTCTCC

Tm(°C)=60

GC%=55

GCCATAGGAGTTTCAGTCGG

Tm(°C)=60

GC%=55

NCBI Id=PDK_30s897081

Gene Start:38517

Gene End:40856

tellurite resistance protein

Sequence

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