Chania

Date Palm Intergenic SSR-SNPs Markers



The following table illustrates theIn vitro PCR analysis of the genomic DNA from six date palm cultivars (Zaghloul, Hayany, Samany, Barhee, Sewi and Bartamoda) using some SSR primers from our database.

Primer Id PCR Image Repeat Information Forward Primer Reverse Primer Sequence Information More Information
PD_IG_SSR_343 Trolltunga Norway

Type:Compound

Seq:(ATAC)10(AT)11(AG)14

Size:90

TGCAACAAAGAGATCTGCCA

Tm(°C)=61

GC%=45

AGACAAAGGCTTCCCCAAAT

Tm(°C)=60

GC%=45

NCBI Id=PDK_30s1004311

Sequence Start:8549

Sequence End:8862

Sequence

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PD_IG_SSR_38 Trolltunga Norway

Type:Compound

Seq:(AT)7a(n)60(TA)8

Size:91

CGCGGTCACTGAAGTCAATA

Tm(°C)=60

GC%=50

GGAAACCCATGGGAACATAA

Tm(°C)=59

GC%=45

NCBI Id=PDK_30s1000401

Sequence Start:34834

Sequence End:35167

Sequence

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PD_IG_SSR_660 Trolltunga Norway

Type:Compound

Seq:(ATAC)6(AT)10(GT)6

Size:56

TAGATCCTCCCCTTTACCCG

Tm(°C)=60

GC%=55

GTATACACACACACGCACGC

Tm(°C)=59

GC%=55

NCBI Id=PDK_30s1008311

Sequence Start:5967

Sequence End:6250

Sequence

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PD_IG_SSR_500 Trolltunga Norway

Type:Compound

Seq:(TC)8(TCTA)8tccatgcttatta (TC)6(AC)5(GCTT)2ga(TC)9

Size:109

GCGGCATCCTCTTGAACTTA

Tm(°C)=60

GC%=50

TTTCCAATCCAACCTAGCAGTT

Tm(°C)=60

GC%=41

NCBI Id=PDK_30s1006221

Sequence Start:458

Sequence End:820

Sequence

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PD_IG_SSR_289 Trolltunga Norway

Type:Compound

Seq:(A)35ga(AAAG)5aaggagagg(GA)6

Size:78

GGCACTCCATGACCTTTTGT

Tm(°C)=60

GC%=50

AAACAAGCCGAAACCAACAG

Tm(°C)=60

GC%=45

NCBI Id=PDK_30s1003481

Sequence Start:88791

Sequence End:89055

Sequence

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PD_IG_SSR_18 Trolltunga Norway

Type:Compound

Seq:(TC)6(TG)4(TA)7(TG)7(TGTA)6

Size:70

CGGTTCAATTTGGGTCAGTT

Tm(°C)=60

GC%=45

CGGGTTGGATCATATTTTGC

Tm(°C)=60

GC%=45

NCBI Id=PDK_30s1000091

Sequence Start:1322

Sequence End:1686

Sequence

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PD_IG_SSR_123 Trolltunga Norway

Type:Compound

Seq:(CT)6cggg(CT)14

Size:44

TTGCTAGAACCCTAACCCCC

Tm(°C)=60

GC%=55

CCCAACCCGTTTAAGGAAAT

Tm(°C)=60

GC%=45

NCBI Id=PDK_30s1001661

Sequence Start:12691

Sequence End:12988

Sequence

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PD_IG_SSR_211 Trolltunga Norway

Type:Compound

Seq:(TATG)5tatatgtatatc(ATGT)2atc (AATA)2gaaatatcaatagtctttttacatc ctttatatgtatatgtatgtaaatatg tatg(TATGTA)5

Size:137

TGGATGTTTCTGGTTACTGTTG

Tm(°C)=58

GC%=41

TTAGGAACCCCCTTATCCCA

Tm(°C)=60

GC%=50

NCBI Id=PDK_30s1002821

Sequence Start:2901

Sequence End:3323

Sequence

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PD_IG_SSR_619 Trolltunga Norway

Type:Compound

Seq:(T)61aaggccttctctatagt ggactggcttaagacgaactcactaag aga(T)11

Size:119

CTGCATGACTTGGCACCTTA

Tm(°C)=60

GC%=50

AAGGCCTTAGCCCAAAGAAG

Tm(°C)=60

GC%=50

NCBI Id=PDK_30s1007511

Sequence Start:58266

Sequence End:58538

Sequence

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PD_IG_SSR_539 Trolltunga Norway

Type:Compound

Seq:(A)48(GAAA)5

Size:68

TGGTTCAGGAGAAGCATGTG

Tm(°C)=60

GC%=50

GAAGAAATTGGGAGAATTAGGG

Tm(°C)=58

GC%=41

NCBI Id=PDK_30s1006631

Sequence Start:1212

Sequence End:1578

Sequence

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PD_IG_SSR_65 Trolltunga Norway

Type:Compound

Seq:(CT)11actgagttgagctgtggg ccttctgcttttgagtctggattcc tggatgtggctttgggattctagga gtttgaagcc(CT)9cactctca(CT)7 tctctctg(A)13ggtggtggtgagcc aggaagctttgctttcatttaataatc gggctgtattcatttgttttgtagctc (AG)8attggcccc(A)18(G)8 cgggtgcacaaccaacctcatactgtgg tgagctagaaagttttgctttcatttat taatcgggctgtatacatttgttttgta gctc(AG)6

Size:380

CCTCTTATCCTTCTCTTCGGG

Tm(°C)=59

GC%=52

AACTTTCTTCTGCATTGCCA

Tm(°C)=59

GC%=40

NCBI Id=PDK_30s1000921

Sequence Start:11073

Sequence End:11676

Sequence

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