Chania

Date Palm Genic SSR-SNPs Markers



The following table illustrates the In-vitro PCR analysis of the genomic DNA from six date palm cultivars (Zaghloul, Hayany, Samany, Barhee, Sewi and Bartamoda) using some SSR primers from our database.

Primer Id PCR Image Repeat Information Forward Primer Reverse Primer Sequence Information Gene product More Information
Pd_GSSR19798 Trolltunga Norway

Type:Compound

Seq: (AG)8(AC)6(AG)3ac(AG)10

Size:56

AGTCGTGGAGAGATTGCGTT

Tm(°C)=60

GC%=50

GCCCATCTTGTAGGGAGACA

Tm(°C)=60

GC%=55

NCBI Id=PDK_30s896321

Gene Start:27751

Gene End:34162

multidrug resistance

Gene Ontology

Sequence

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Pd_GSSR20333 Trolltunga Norway

Type:Di

Seq: (AT)6

Size:12

AAGTTCATGGGATGGTCGAG

Tm(°C)=60

GC%=50

GGCTTCAACAATATGCGACA

Tm(°C)=60

GC%=45

NCBI Id=PDK_30s909521

Gene Start:479

Gene End:7523

non-race specific disease resistance 1

-

Sequence

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Pd_GSSR22331 Trolltunga Norway

Type:Compound

Seq: (TCC)5tt(TC)7

Size:31

TACGTGGTCTTGCACGGTAA

Tm(°C)=60

GC%=50

TTAAGCTCGCACTCCTCGAT

Tm(°C)=60

GC%=50

NCBI Id=PDK_30s969751

Gene Start:8846

Gene End:13517

wrky transcription

-

Sequence

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Pd_GSSR18997 Trolltunga Norway

Type:Compound

Seq: (AT)13a(CACATA)2c(AT)7

Size:54

TGGAGGCACAAACTCCAAAT

Tm(°C)=60

GC%=45

GCCTGATGATAGTCTCGGCT

Tm(°C)=59

GC%=55

NCBI Id=PDK_30s877681

Gene Start:7022

Gene End:12154

wrky transcription

-

Sequence

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Pd_GSSR7241 Trolltunga Norway

Type:Tri

Seq: (AAG)6

Size:18

GATGCCAAGCACTGTGATGT

Tm(°C)=60

GC%=50

TATCCTGCATGCACCAATGT

Tm(°C)=60

GC%=45

NCBI Id=PDK_30s65509652

Gene Start:1438

Gene End:13310

multidrug resistance protein abc transporter family

-

Sequence

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Pd_GSSR4096 Trolltunga Norway

Type:Mono

Seq: (T)11

Size:11

CGCAATCATTAAGCTCAGTCAG

Tm(°C)=60

GC%=45

TTGGGAATGGGTAAGGTCAA

Tm(°C)=60

GC%=45

NCBI Id=PDK_30s1130951

Gene Start:4900

Gene End:9698

cc-nbs-lrr resistance protein

Gene Ontology

Sequence

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Pd_GSSR3388 Trolltunga Norway

Type:Mono

Seq: (A)16

Size:16

TTCCAATGAAAGCCTTTTGG

Tm(°C)=60

GC%=40

ACCCGGAACAGGTTACTGAG

Tm(°C)=59

GC%=55

NCBI Id=PDK_30s1104801

Gene Start:30723

Gene End:37258

natural resistance-associated macrophage

Gene Ontology

Sequence

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Pd_GSSR2002 Trolltunga Norway

Type:Mono

Seq: (A)12

Size:12

GGTGTTGCATACCCCATTTC

Tm(°C)=60

GC%=50

GCACAATGCTCAAAAAGCAA

Tm(°C)=60

GC%=40

NCBI Id=PDK_30s1065091

Gene Start:52197

Gene End:62496

enhanced disease resistance 1

-

Sequence

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Pd_GSSR3981 Trolltunga Norway

Type:Mono

Seq: (T)12

Size:12

TTCCTCCTGTTTTTCCCCTT

Tm(°C)=60

GC%=45

CTCACCGGCTCTACCAGAAG

Tm(°C)=60

GC%=60

NCBI Id=PDK_30s1125831

Gene Start:5601

Gene End:11694

negative regulator of systemic acquired resistance

Gene Ontology

Sequence

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Pd_GSSR4657 Trolltunga Norway

Type:Compound

Seq: (AT)6(GT)5(ACAT)3atatgat (ACAT)4atatatct(GTGC)5

Size:85

TTGATGAGCCTCCTCTTTGG

Tm(°C)=60

GC%=50

GATGGTGAGAGTTGGGGAGA

Tm(°C)=60

GC%=55

NCBI Id=PDK_30s1148111

Gene Start:3266

Gene End:32958

multidrug resistance protein

-

Sequence

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Pd_GSSR6184 Trolltunga Norway

Type:Tri

Seq: (AAT)8

Size:24

CCCCAGAAAATGCCTTAACA

Tm(°C)=60

GC%=45

AAGAGCGTTGACTGCTACCAA

Tm(°C)=60

GC%=48

NCBI Id=PDK_30s1209131

Gene Start:16663

Gene End:19937

agl6-like mads box transcription factor

Gene Ontology

Sequence

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Pd_GSSR19717 Trolltunga Norway

Type:Tri

Seq: (CTC)5

Size:15

CCATTTCGATGTCACCTCCT

Tm(°C)=60

GC%=50

GCGAACCATACGAAAGCAGT

Tm(°C)=60

GC%=50

NCBI Id=PDK_30s893291

Gene Start:755

Gene End:4432

mads-box transcription factor

-

Sequence

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Pd_GSSR14034 Trolltunga Norway

Type:Mono

Seq: (T)10

Size:10

CGCACTCTGGAATCAACTCA

Tm(°C)=60

GC%=50

CATCTGCCGACAGAGTCAAA

Tm(°C)=60

GC%=50

NCBI Id=PDK_30s767921

Gene Start:186922

Gene End:194251

rust resistance kinase lr10

Gene Ontology

Sequence

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Pd_GSSR18389 Trolltunga Norway

Type:Mono

Seq: (T)10

Size:10

AGGCAGAGAGATGTCCGTGT

Tm(°C)=60

GC%=55

AAAAGTCTCCATGTCCGTGC

Tm(°C)=60

GC%=50

NCBI Id=PDK_30s863811

Gene Start:1363

Gene End:19246

abc-type transport system involved in resistance to organic periplasmic component

-

Sequence

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Pd_GSSR2418 Trolltunga Norway

Type:Mono

Seq: (T)11

Size:11

AGCAACACCCTATGCAGCTT

Tm(°C)=60

GC%=50

TGGCTGAGGACAACTTTTCA

Tm(°C)=59

GC%=45

NCBI Id=PDK_30s1076091

Gene Start:57384

Gene End:60783

tir-nbs resistance protein

Gene Ontology

Sequence

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